{
  "_id": "6a5716b1ff0138dec5d6d91c",
  "Package": "diyar",
  "Type": "Package",
  "Title": "Record Linkage and Epidemiological Case Definitions in 'R'",
  "Date": "2023-11-12",
  "Version": "0.5.1.9012",
  "URL": "https://olisansonwu.github.io/diyar/index.html",
  "BugReports": "https://github.com/OlisaNsonwu/diyar/issues",
  "Author": "Olisaeloka Nsonwu",
  "Maintainer": "Olisaeloka Nsonwu <olisa.nsonwu@gmail.com>",
  "Description": "An R package for iterative and batched record linkage, and\napplying epidemiological case definitions. 'diyar' can be used\nfor deterministic and probabilistic record linkage, or\nmultistage record linkage combining both approaches. It\nfeatures the implementation of nested match criteria, and\nmechanisms to address missing data and conflicting matches\nduring stepwise record linkage. Case definitions are\nimplemented by assigning records to groups based on match\ncriteria such as person or place, and overlapping time or\nduration of events e.g. sample collection dates or periods of\nhospital stays. Matching records are assigned a unique group\nID. Index and duplicate records are removed or further analyses\nas required.",
  "License": "GPL-3",
  "Encoding": "UTF-8",
  "LazyData": "true",
  "RoxygenNote": "7.3.2",
  "VignetteBuilder": "knitr",
  "Language": "en-GB",
  "Repository": "https://olisansonwu.r-universe.dev",
  "Date/Publication": "2026-05-16 14:56:32 UTC",
  "RemoteUrl": "https://github.com/olisansonwu/diyar",
  "RemoteRef": "HEAD",
  "RemoteSha": "f9422ea03328c4171a3fc836379c8054740d0d9b",
  "NeedsCompilation": "no",
  "Packaged": {
    "Date": "2026-07-15 05:08:53 UTC",
    "User": "root"
  },
  "_user": "olisansonwu",
  "_type": "src",
  "_file": "diyar_0.5.1.9012.tar.gz",
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  "_expires": "2026-10-23T05:12:16.000Z",
  "_created": "2026-07-15T05:08:53.000Z",
  "_published": "2026-07-15T05:12:17.722Z",
  "_jobs": [
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  "_buildurl": "https://github.com/r-universe/olisansonwu/actions/runs/29390535297",
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  "_upstream": "https://github.com/olisansonwu/diyar",
  "_commit": {
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    "author": "OlisaNsonwu <47105194+OlisaNsonwu@users.noreply.github.com>",
    "committer": "OlisaNsonwu <47105194+OlisaNsonwu@users.noreply.github.com>",
    "message": "0.5.1.9012\n",
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    "login": "olisansonwu",
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    "source": "https://cranlogs.r-pkg.org/downloads/total/last-month/diyar"
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  "_rbuild": "4.6.1",
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    "extra/NEWS.html",
    "extra/NEWS.txt",
    "extra/readme.html",
    "extra/readme.md",
    "manual.pdf"
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  "_homeurl": "https://github.com/olisansonwu/diyar",
  "_realowner": "olisansonwu",
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    {
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  ],
  "_exports": [
    "across",
    "aligns_end",
    "aligns_start",
    "as.epid",
    "as.number_line",
    "as.pane",
    "as.pid",
    "attrs",
    "bys_count",
    "bys_count_legacy",
    "bys_cummax",
    "bys_cummax_legacy",
    "bys_cummin",
    "bys_cummin_legacy",
    "bys_cumprod",
    "bys_cumprod_legacy",
    "bys_cumsum",
    "bys_cumsum_legacy",
    "bys_func",
    "bys_lag",
    "bys_lag_legacy",
    "bys_lead",
    "bys_lead_legacy",
    "bys_max",
    "bys_max_legacy",
    "bys_min",
    "bys_min_legacy",
    "bys_nval",
    "bys_nval_legacy",
    "bys_position",
    "bys_position_legacy",
    "bys_prod",
    "bys_prod_legacy",
    "bys_rank",
    "bys_rank_legacy",
    "bys_shift",
    "bys_sum",
    "bys_sum_legacy",
    "bys_val",
    "bys_val_legacy",
    "chain",
    "combi",
    "custom_sort",
    "decode",
    "delink",
    "encode",
    "end_point",
    "end_point<-",
    "epid_lengths",
    "epid_windows",
    "episodes",
    "episodes_af_shift",
    "episodes_wf_repeats",
    "episodes_wf_splits",
    "eval_sub_criteria",
    "exact",
    "exact_match",
    "exclude_overlap_method",
    "expand_number_line",
    "false",
    "flatten_list",
    "inbetween",
    "include_overlap_method",
    "index_window",
    "intersect_number_lines",
    "invert_number_line",
    "is.epid",
    "is.number_line",
    "is.pane",
    "is.pid",
    "left_point",
    "left_point<-",
    "links",
    "links_af_probabilistic",
    "links_wf_episodes",
    "links_wf_probabilistic",
    "listr",
    "make_episodes",
    "make_ids",
    "make_pairs",
    "make_pairs_wf_source",
    "make_sets",
    "merge_ids",
    "none",
    "number_line",
    "number_line_sequence",
    "number_line_width",
    "overlap",
    "overlap_method",
    "overlap_method_codes",
    "overlap_method_names",
    "overlaps",
    "partitions",
    "prob_link",
    "prob_score_range",
    "range_match",
    "reframe",
    "reverse_number_line",
    "right_point",
    "right_point<-",
    "schema",
    "sets",
    "shift_number_line",
    "start_point",
    "start_point<-",
    "sub_criteria",
    "subtract_number_lines",
    "true",
    "union_number_lines",
    "unpack_sub_criteria",
    "x_across_y",
    "x_aligns_end_y",
    "x_aligns_start_y",
    "x_chain_y",
    "x_inbetween_y",
    "y_across_x",
    "y_aligns_end_x",
    "y_aligns_start_x",
    "y_chain_x",
    "y_inbetween_x"
  ],
  "_datasets": [
    {
      "name": "episode_units",
      "title": "Datasets in 'diyar' package",
      "object": "episode_units",
      "class": [
        "list"
      ],
      "fields": [],
      "table": true,
      "tojson": true
    },
    {
      "name": "hospital_admissions",
      "title": "Datasets in 'diyar' package",
      "object": "hospital_admissions",
      "class": [
        "data.frame"
      ],
      "fields": [
        "rd_id",
        "admin_dt",
        "discharge_dt",
        "epi_len"
      ],
      "rows": 11,
      "table": true,
      "tojson": true
    },
    {
      "name": "hourly_data",
      "title": "Datasets in 'diyar' package",
      "object": "hourly_data",
      "class": [
        "data.frame"
      ],
      "fields": [
        "rid",
        "datetime",
        "category",
        "epi",
        "recur"
      ],
      "rows": 13,
      "table": true,
      "tojson": true
    },
    {
      "name": "infections",
      "title": "Datasets in 'diyar' package",
      "object": "infections",
      "class": [
        "data.frame"
      ],
      "fields": [
        "rd_id",
        "date",
        "infection",
        "epi_len"
      ],
      "rows": 11,
      "table": true,
      "tojson": true
    },
    {
      "name": "infections_2",
      "title": "Datasets in 'diyar' package",
      "object": "infections_2",
      "class": [
        "data.frame"
      ],
      "fields": [
        "rid",
        "date",
        "pid",
        "infx",
        "epi",
        "recur"
      ],
      "rows": 6,
      "table": true,
      "tojson": true
    },
    {
      "name": "infections_3",
      "title": "Datasets in 'diyar' package",
      "object": "infections_3",
      "class": [
        "data.frame"
      ],
      "fields": [
        "rid",
        "date",
        "pid",
        "epi",
        "recur"
      ],
      "rows": 11,
      "table": true,
      "tojson": true
    },
    {
      "name": "infections_4",
      "title": "Datasets in 'diyar' package",
      "object": "infections_4",
      "class": [
        "data.frame"
      ],
      "fields": [
        "rid",
        "date",
        "pid",
        "organism",
        "source",
        "treated",
        "epi",
        "recur"
      ],
      "rows": 11,
      "table": true,
      "tojson": true
    },
    {
      "name": "missing_staff_id",
      "title": "Datasets in 'diyar' package",
      "object": "missing_staff_id",
      "class": [
        "data.frame"
      ],
      "fields": [
        "r_id",
        "staff_id",
        "age",
        "initials",
        "hair_colour",
        "branch_office",
        "source_1",
        "source_2"
      ],
      "rows": 7,
      "table": true,
      "tojson": true
    },
    {
      "name": "Opes",
      "title": "Datasets in 'diyar' package",
      "object": "Opes",
      "class": [
        "data.frame"
      ],
      "fields": [
        "rd_id",
        "name",
        "department",
        "hair_colour",
        "date_of_birth",
        "db_pt1",
        "db_pt2",
        "db_pt3"
      ],
      "rows": 8,
      "table": true,
      "tojson": true
    },
    {
      "name": "overlap_methods",
      "title": "Datasets in 'diyar' package",
      "object": "overlap_methods",
      "class": [
        "list"
      ],
      "fields": [],
      "table": false,
      "tojson": true
    },
    {
      "name": "patient_list",
      "title": "Datasets in 'diyar' package",
      "object": "patient_list",
      "class": [
        "data.frame"
      ],
      "fields": [
        "rd_id",
        "forename",
        "surname",
        "sex"
      ],
      "rows": 6,
      "table": true,
      "tojson": true
    },
    {
      "name": "patient_list_2",
      "title": "Datasets in 'diyar' package",
      "object": "patient_list_2",
      "class": [
        "data.frame"
      ],
      "fields": [
        "rd_id",
        "forename",
        "surname",
        "sex"
      ],
      "rows": 5,
      "table": true,
      "tojson": true
    },
    {
      "name": "patient_records",
      "title": "Datasets in 'diyar' package",
      "object": "patient_records",
      "class": [
        "data.frame"
      ],
      "fields": [
        "forename",
        "middlename",
        "surname",
        "dateofbirth",
        "specimendate",
        "sex",
        "identity"
      ],
      "rows": 11047,
      "table": true,
      "tojson": true
    },
    {
      "name": "staff_records",
      "title": "Datasets in 'diyar' package",
      "object": "staff_records",
      "class": [
        "data.frame"
      ],
      "fields": [
        "r_id",
        "forename",
        "surname",
        "sex",
        "dataset"
      ],
      "rows": 7,
      "table": true,
      "tojson": true
    }
  ],
  "_help": [
    {
      "page": "bys_funcs",
      "title": "Vectorised approach to group operations.",
      "topics": [
        "bys",
        "bys_count",
        "bys_cummax",
        "bys_cummin",
        "bys_cumprod",
        "bys_cumsum",
        "bys_func",
        "bys_funcs",
        "bys_lag",
        "bys_lead",
        "bys_max",
        "bys_min",
        "bys_nval",
        "bys_position",
        "bys_prod",
        "bys_rank",
        "bys_shift",
        "bys_sum",
        "bys_val"
      ]
    },
    {
      "page": "bys_funcs_legacy",
      "title": "Vectorised approach to group operations.",
      "topics": [
        "bys_count_legacy",
        "bys_cummax_legacy",
        "bys_cummin_legacy",
        "bys_cumprod_legacy",
        "bys_cumsum_legacy",
        "bys_funcs_legacy",
        "bys_lag_legacy",
        "bys_lead_legacy",
        "bys_max_legacy",
        "bys_min_legacy",
        "bys_nval_legacy",
        "bys_position_legacy",
        "bys_prod_legacy",
        "bys_rank_legacy",
        "bys_sum_legacy",
        "bys_val_legacy"
      ]
    },
    {
      "page": "combi",
      "title": "Vector combinations",
      "topics": [
        "combi"
      ]
    },
    {
      "page": "custom_sort",
      "title": "Nested sorting",
      "topics": [
        "custom_sort"
      ]
    },
    {
      "page": "d_report",
      "title": "d_report",
      "topics": [
        "as.data.frame.d_report",
        "as.list.d_report",
        "d_report",
        "plot.d_report"
      ]
    },
    {
      "page": "delink",
      "title": "Unlink group identifiers",
      "topics": [
        "delink",
        "delink.epid",
        "delink.pane",
        "delink.pid"
      ]
    },
    {
      "page": "encode",
      "title": "Labelling in 'diyar'",
      "topics": [
        "decode",
        "decode.default",
        "decode.d_label",
        "encode",
        "encode.default",
        "encode.d_label",
        "rep.d_label",
        "[.d_label",
        "[[.d_label"
      ]
    },
    {
      "page": "epid-class",
      "title": "'epid' object",
      "topics": [
        "as.data.frame.epid",
        "as.epid",
        "as.list.epid",
        "c,epid-method",
        "epid-class",
        "format.epid",
        "is.epid",
        "print.epid_summary",
        "rep,epid-method",
        "show,epid-method",
        "summary.epid",
        "unique.epid",
        "[,epid-method",
        "[[,epid-method"
      ]
    },
    {
      "page": "episodes",
      "title": "Group dated events into episodes.",
      "topics": [
        "episodes",
        "episodes_af_shift",
        "links_wf_episodes"
      ]
    },
    {
      "page": "episodes_wf_repeats",
      "title": "Link events to chronological episodes.",
      "topics": [
        "episodes_wf_repeats"
      ]
    },
    {
      "page": "links_wf",
      "title": "Record linkage",
      "topics": [
        "links_af_probabilistic",
        "links_wf",
        "links_wf_probabilistic",
        "link_wf",
        "prob_score_range"
      ]
    },
    {
      "page": "links",
      "title": "Multistage record linkage",
      "topics": [
        "links"
      ]
    },
    {
      "page": "listr",
      "title": "Grammatical lists.",
      "topics": [
        "listr"
      ]
    },
    {
      "page": "make_ids",
      "title": "Convert an edge list to record identifiers.",
      "topics": [
        "make_ids"
      ]
    },
    {
      "page": "make_pairs",
      "title": "Combinations and permutations of record-sets.",
      "topics": [
        "make_pairs",
        "make_pairs_wf_source",
        "make_sets",
        "sets"
      ]
    },
    {
      "page": "make_s4_ids",
      "title": "Create 'epid' and 'pid' objects with index of matching records",
      "topics": [
        "make_episodes",
        "make_pids",
        "make_s4_ids"
      ]
    },
    {
      "page": "merge_identifiers",
      "title": "Merge group identifiers",
      "topics": [
        "merge_identifiers",
        "merge_ids",
        "merge_ids.default",
        "merge_ids.epid",
        "merge_ids.pane",
        "merge_ids.pid"
      ]
    },
    {
      "page": "number_line",
      "title": "'number_line'",
      "topics": [
        "as.number_line",
        "end_point",
        "end_point<-",
        "expand_number_line",
        "invert_number_line",
        "is.number_line",
        "left_point",
        "left_point<-",
        "number_line",
        "number_line_sequence",
        "number_line_width",
        "reverse_number_line",
        "right_point",
        "right_point<-",
        "shift_number_line",
        "start_point",
        "start_point<-"
      ]
    },
    {
      "page": "number_line-class",
      "title": "'number_line' object",
      "topics": [
        "$,number_line-method",
        "$<-,number_line-method",
        "as.data.frame.number_line",
        "as.list.number_line",
        "c,number_line-method",
        "format.number_line",
        "number_line-class",
        "rep,number_line-method",
        "seq.number_line",
        "show,number_line-method",
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